IL_2D3O_055

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_055 not in the Motif Atlas

Homologous match to IL_4WF9_051

Geometric discrepancy: 0.215

The information below is about IL_4WF9_051

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2D3O|1|0|C|1364
2D3O|1|0|U|1365
2D3O|1|0|A|1366
2D3O|1|0|A|1367
2D3O|1|0|G|1368
*
2D3O|1|0|C|1389
2D3O|1|0|G|1390
2D3O|1|0|A|1391
2D3O|1|0|U|1392
2D3O|1|0|G|1393

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains