IL_2D3O_071

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

2D3O|1|0|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_071 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1442

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2D3O|1|0|C|1703
2D3O|1|0|G|1704
2D3O|1|0|U|1705
2D3O|1|0|A|1706
2D3O|1|0|A|1707
2D3O|1|0|C|1708
*
2D3O|1|0|G|1713
2D3O|1|0|A|1714
2D3O|1|0|A|1715
2D3O|1|0|G|1716
2D3O|1|0|A|1717
2D3O|1|0|A|1718
2D3O|1|0|G|1719

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains