IL_2D3O_073

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

2D3O|1|0|C|1792, 2D3O|1|0|C|1808, 2D3O|1|0|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_073 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.2728

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

2D3O|1|0|U|1789
2D3O|1|0|G|1790
2D3O|1|0|C|1791
2D3O|1|0|C|1792
2D3O|1|0|A|1793
2D3O|1|0|A|1794
2D3O|1|0|C|1795
*
2D3O|1|0|G|1805
2D3O|1|0|G|1806
2D3O|1|0|A|1807
2D3O|1|0|C|1808
2D3O|1|0|G|1809
2D3O|1|0|U|1810
2D3O|1|0|A|1811
2D3O|1|0|U|1812
2D3O|1|0|A|1813

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains