IL_2D3O_090

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_090 not in the Motif Atlas

Homologous match to IL_7RQB_084

Geometric discrepancy: 0.5273

The information below is about IL_7RQB_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|C|2091
2D3O|1|0|U|2092
2D3O|1|0|G|2093
*
2D3O|1|0|C|2162
2D3O|1|0|U|2163
2D3O|1|0|G|2164

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains