IL_2D3O_091

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

2D3O|1|0|C|2094, 2D3O|1|0|G|2099, 2D3O|1|0|A|2100, 2D3O|1|0|U|2101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|G|2093
2D3O|1|0|C|2094
2D3O|1|0|G|2095
2D3O|1|0|U|2096
2D3O|1|0|A|2097
2D3O|1|0|G|2098
2D3O|1|0|G|2099
2D3O|1|0|A|2100
2D3O|1|0|U|2101
2D3O|1|0|A|2102
2D3O|1|0|G|2103
*
2D3O|1|0|C|2161
2D3O|1|0|C|2162

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains