IL_2D3O_092

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGGAG*CAACGGUGAAAUACC

Length

20 nucleotides

Bulged bases

2D3O|1|0|G|2108, 2D3O|1|0|U|2155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|G|2106
2D3O|1|0|G|2107
2D3O|1|0|G|2108
2D3O|1|0|A|2109
2D3O|1|0|G|2110
*
2D3O|1|0|C|2144
2D3O|1|0|A|2145
2D3O|1|0|A|2146
2D3O|1|0|C|2147
2D3O|1|0|G|2148
2D3O|1|0|G|2149
2D3O|1|0|U|2150
2D3O|1|0|G|2151
2D3O|1|0|A|2152
2D3O|1|0|A|2153
2D3O|1|0|A|2154
2D3O|1|0|U|2155
2D3O|1|0|A|2156
2D3O|1|0|C|2157
2D3O|1|0|C|2158

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains