IL_2D3O_094

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGCGAAA*UGGAG

Length

13 nucleotides

Bulged bases

2D3O|1|0|G|2114, 2D3O|1|0|C|2115, 2D3O|1|0|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|C|2112
2D3O|1|0|U|2113
2D3O|1|0|G|2114
2D3O|1|0|C|2115
2D3O|1|0|G|2116
2D3O|1|0|A|2117
2D3O|1|0|A|2118
2D3O|1|0|A|2119
*
2D3O|1|0|U|2138
2D3O|1|0|G|2139
2D3O|1|0|G|2140
2D3O|1|0|A|2141
2D3O|1|0|G|2142

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains