IL_2D3O_098

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_098 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.1637

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

2D3O|1|0|C|2329
2D3O|1|0|G|2330
2D3O|1|0|A|2331
2D3O|1|0|G|2332
*
2D3O|1|0|C|2343
2D3O|1|0|G|2344
2D3O|1|0|A|2345
2D3O|1|0|G|2346

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains