IL_2D3O_113

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_113 not in the Motif Atlas

Homologous match to IL_4WF9_100

Geometric discrepancy: 0.2007

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2D3O|1|0|C|2631
2D3O|1|0|U|2632
2D3O|1|0|A|2633
2D3O|1|0|G|2634
2D3O|1|0|U|2635
2D3O|1|0|A|2636
2D3O|1|0|C|2637
*
2D3O|1|0|G|2642
2D3O|1|0|G|2643
2D3O|1|0|A|2644
2D3O|1|0|C|2645
2D3O|1|0|C|2646
2D3O|1|0|G|2647

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains