IL_2D3O_117

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

2D3O|1|0|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_117 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0918

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

2D3O|1|0|G|2717
2D3O|1|0|A|2718
2D3O|1|0|U|2719
2D3O|1|0|A|2720
2D3O|1|0|A|2721
2D3O|1|0|C|2722
*
2D3O|1|0|G|2742
2D3O|1|0|G|2743
2D3O|1|0|A|2744
2D3O|1|0|A|2745
2D3O|1|0|G|2746
2D3O|1|0|C|2747

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains