IL_2D3O_120

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

2D3O|1|0|C|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_120 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.3477

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

2D3O|1|0|U|2822
2D3O|1|0|G|2823
2D3O|1|0|C|2824
2D3O|1|0|A|2825
2D3O|1|0|C|2826
2D3O|1|0|G|2827
*
2D3O|1|0|U|2840
2D3O|1|0|U|2841
2D3O|1|0|C|2842
2D3O|1|0|A|2843
2D3O|1|0|G|2844

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains