IL_2D3O_122

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

2D3O|1|0|U|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_122 not in the Motif Atlas

Homologous match to IL_7A0S_037

Geometric discrepancy: 0.2726

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

2D3O|1|0|G|1035
2D3O|1|0|G|1036
2D3O|1|0|U|1037
2D3O|1|0|U|1038
2D3O|1|0|A|1039
2D3O|1|0|A|1040
2D3O|1|0|G|1041
*
2D3O|1|0|C|1135
2D3O|1|0|G|1136
2D3O|1|0|A|1137
2D3O|1|0|A|1138
2D3O|1|0|A|1139
2D3O|1|0|A|1140
2D3O|1|0|U|1141
2D3O|1|0|G|1142
2D3O|1|0|A|1143
2D3O|1|0|U|1144
2D3O|1|0|C|1145
2D3O|1|0|G|1146
2D3O|1|0|G|1147
2D3O|1|0|G|1148
2D3O|1|0|G|1149
2D3O|1|0|C|1150

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains