IL_2D3O_128

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCGC*GCCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_128 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3141

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

2D3O|1|0|C|1218
2D3O|1|0|C|1219
2D3O|1|0|G|1220
2D3O|1|0|C|1221
*
2D3O|1|0|G|1251
2D3O|1|0|C|1252
2D3O|1|0|C|1253
2D3O|1|0|G|1254

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains