IL_2D3O_129

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUGAGG*CGCAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_129 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.258

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2D3O|1|0|G|1369
2D3O|1|0|U|1370
2D3O|1|0|G|1371
2D3O|1|0|A|1372
2D3O|1|0|G|1373
2D3O|1|0|G|1374
*
2D3O|1|0|C|1383
2D3O|1|0|G|1384
2D3O|1|0|C|1385
2D3O|1|0|A|1386
2D3O|1|0|G|1387
2D3O|1|0|C|1388

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains