IL_2D3O_143

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

2D3O|1|0|A|1921, 2D3O|1|0|U|1927, 2D3O|1|0|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2D3O_143 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.4316

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

2D3O|1|0|C|1917
2D3O|1|0|G|1918
2D3O|1|0|A|1919
2D3O|1|0|A|1920
2D3O|1|0|A|1921
2D3O|1|0|U|1922
2D3O|1|0|U|1923
2D3O|1|0|C|1924
2D3O|1|0|C|1925
2D3O|1|0|U|1926
2D3O|1|0|U|1927
2D3O|1|0|G|1928
*
2D3O|1|0|C|1944
2D3O|1|0|C|1945
2D3O|1|0|U|1946
2D3O|1|0|G|1947

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains