IL_2E5L_025

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2E5L_025 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.1252

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

2E5L|1|A|G|597
2E5L|1|A|U|598
*
2E5L|1|A|A|640
2E5L|1|A|U|641
2E5L|1|A|A|642
2E5L|1|A|C|643

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain Q

30S ribosomal protein S17