IL_2E5L_063

3D structure

PDB id

2E5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2E5L|1|A|U|952
2E5L|1|A|G|953
2E5L|1|A|G|954
*
2E5L|1|A|C|1226
2E5L|1|A|A|1227
2E5L|1|A|C|1228
2E5L|1|A|A|1229

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19