IL_2ESE_005

3D structure

PDB id

2ESE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SAM domain of Vts1p in complex with RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

2ESE|5|B|C|537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ESE_005 not in the Motif Atlas

Geometric match to IL_3SN2_002

Geometric discrepancy: 0.3813

The information below is about IL_3SN2_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

2ESE|5|B|U|532
2ESE|5|B|C|533
*
2ESE|5|B|G|536
2ESE|5|B|C|537
2ESE|5|B|A|538

Current chains

Chain B

5'-R(*GP*GP*AP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP*UP*UP*CP*C)-3'

Nearby chains

Chain A

Vts1p