IL_2F4T_003

3D structure

PDB id

2F4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Asite RNA + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAG*CAC

Length

7 nucleotides

Bulged bases

2F4T|1|A|A|1492, 2F4T|1|A|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2F4T_003 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2699

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

2F4T|1|A|G|1491
2F4T|1|A|A|1492
2F4T|1|A|A|1493
2F4T|1|A|G|1494
*
2F4T|1|B|C|1407
2F4T|1|B|A|1408
2F4T|1|B|C|1409

Current chains

Chain A

5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'

Chain B

5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'

Nearby chains