IL_2F4U_001

3D structure

PDB id

2F4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Asite RNA + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

2F4U|1|A|U|1406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2F4U_001 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.1668

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

2F4U|1|A|G|1405
2F4U|1|A|U|1406
2F4U|1|A|C|1407
*
2F4U|1|B|G|1494
2F4U|1|B|U|1495
2F4U|1|B|C|1496

Current chains

Chain A

5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'

Chain B

5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'

Nearby chains