IL_2F4V_028

3D structure

PDB id

2F4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosome + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2F4V_028 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.3601

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

2F4V|1|A|C|656
2F4V|1|A|G|657
2F4V|1|A|G|658
*
2F4V|1|A|C|747
2F4V|1|A|C|748
2F4V|1|A|C|749
2F4V|1|A|G|750

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S15