IL_2F4V_059

3D structure

PDB id

2F4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosome + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2F4V_059 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3335

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

2F4V|1|A|C|1259
2F4V|1|A|C|1260
2F4V|1|A|A|1261
2F4V|1|A|C|1262
*
2F4V|1|A|G|1273
2F4V|1|A|G|1274
2F4V|1|A|A|1275
2F4V|1|A|G|1276

Current chains

Chain A

16S ribosomal RNA

Nearby chains