IL_2F4V_062

3D structure

PDB id

2F4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosome + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2F4V_062 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.1211

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2F4V|1|A|G|1401
2F4V|1|A|C|1402
2F4V|1|A|C|1403
2F4V|1|A|C|1404
*
2F4V|1|A|G|1497
2F4V|1|A|U|1498
2F4V|1|A|A|1499
2F4V|1|A|A|1500
2F4V|1|A|C|1501

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Z

5'-R(P*UP*UP*CP*U)-3'