IL_2F4V_066
3D structure
- PDB id
- 2F4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosome + designer antibiotic
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAGC*GUGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2F4V_066 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.2305
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
2F4V|1|A|G|1416
2F4V|1|A|G|1417
2F4V|1|A|A|1418
2F4V|1|A|G|1419
2F4V|1|A|C|1420
*
2F4V|1|A|G|1480
2F4V|1|A|U|1481
2F4V|1|A|G|1482
2F4V|1|A|A|1483
2F4V|1|A|C|1484
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
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