IL_2GIO_006

3D structure

PDB id

2GIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of a portion of the 5'UTR of HspA mRNA of Bradyrhizobium japonicum

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2GIO_006 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.0911

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

2GIO|3|A|U|9
2GIO|3|A|G|10
2GIO|3|A|C|11
*
2GIO|3|A|G|20
2GIO|3|A|G|21
2GIO|3|A|A|22

Current chains

Chain A

29-MER

Nearby chains