IL_2H1M_001

3D structure

PDB id

2H1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Synthesis, Oxidation Behavior, Crystallization and Structure of 2'-Methylseleno Guanosine Containing RNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

A(XUG)A*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2H1M_001 not in the Motif Atlas

Geometric match to IL_8C3A_130

Geometric discrepancy: 0.1137

The information below is about IL_8C3A_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

2H1M|1|A|A|3
2H1M|1|A|XUG|4
2H1M|1|A|A|5
*
2H1M|1|B|U|28
2H1M|1|B|C|29
2H1M|1|B|U|30

Current chains

Chain A

5'-R(*GP*CP*AP*(XUG)P*AP*GP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'

Chain B

5'-R(*GP*CP*AP*(XUG)P*AP*GP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'

Nearby chains