IL_2HHH_042

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

2HHH|1|A|U|1178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HHH_042 not in the Motif Atlas

Geometric match to IL_4LFB_046

Geometric discrepancy: 0.2349

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

2HHH|1|A|C|1043
2HHH|1|A|G|1044
*
2HHH|1|A|C|1177
2HHH|1|A|U|1178
2HHH|1|A|G|1179

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain E

30S ribosomal protein S5

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14