IL_2HHH_058

3D structure

PDB id

2HHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGAGC*GUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HHH_058 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.248

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

2HHH|1|A|G|1399
2HHH|1|A|G|1400
2HHH|1|A|A|1401
2HHH|1|A|G|1402
2HHH|1|A|C|1403
*
2HHH|1|A|G|1458
2HHH|1|A|U|1459
2HHH|1|A|G|1460
2HHH|1|A|A|1461
2HHH|1|A|C|1462

Current chains

Chain A

16S ribosomal RNA

Nearby chains