IL_2HO6_002

3D structure

PDB id

2HO6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAAAC*GCAUAGAGC*C

Length

17 nucleotides

Bulged bases

2HO6|1|B|G|130

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HO6_002 not in the Motif Atlas

Homologous match to IL_2Z75_001

Geometric discrepancy: 0.0818

The information below is about IL_2Z75_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2HO6|1|B|G|101
2HO6|1|B|G|102
2HO6|1|B|A|104
2HO6|1|B|A|105
2HO6|1|B|A|106
2HO6|1|B|A|107
2HO6|1|B|C|108
*
2HO6|1|B|G|123
2HO6|1|B|C|124
2HO6|1|B|A|125
2HO6|1|B|U|126
2HO6|1|B|A|127
2HO6|1|B|G|128
2HO6|1|B|A|129
2HO6|1|B|G|130
2HO6|1|B|C|131
*
2HO6|1|B|C|131

Current chains

Chain B

glmS ribozyme RNA

Nearby chains

Chain A

glmS ribozyme substrate RNA