IL_2IRN_014

3D structure

PDB id

2IRN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGAG*UGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2IRN_014 not in the Motif Atlas

Geometric match to IL_6E7L_002

Geometric discrepancy: 0.2552

The information below is about IL_6E7L_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_69065.2

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

2IRN|14|A|U|3
2IRN|14|A|G|4
2IRN|14|A|A|5
2IRN|14|A|G|6
*
2IRN|14|B|U|12
2IRN|14|B|G|13
2IRN|14|B|A|14
2IRN|14|B|G|15

Current chains

Chain A

5'-R(P*GP*CP*UP*GP*AP*GP*GP*CP*U)-3'

Chain B

5'-R(P*GP*CP*UP*GP*AP*GP*GP*CP*U)-3'

Nearby chains