IL_2IRO_013

3D structure

PDB id

2IRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2IRO_013 not in the Motif Atlas

Geometric match to IL_3FTE_001

Geometric discrepancy: 0.308

The information below is about IL_3FTE_001

Detailed Annotation

Quadruple sheared

Broad Annotation

Quadruple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

2IRO|13|A|C|2
2IRO|13|A|G|3
2IRO|13|A|G|4
2IRO|13|A|A|5
2IRO|13|A|U|6
2IRO|13|A|G|7
*
2IRO|13|B|C|11
2IRO|13|B|G|12
2IRO|13|B|G|13
2IRO|13|B|A|14
2IRO|13|B|U|15
2IRO|13|B|G|16

Current chains

Chain A

5'-R(P*GP*CP*GP*GP*AP*UP*GP*CP*U)-3'

Chain B

5'-R(P*GP*CP*GP*GP*AP*UP*GP*CP*U)-3'

Nearby chains