IL_2JL5_039

3D structure

PDB id

2JL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

2JL5|1|A|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL5_039 not in the Motif Atlas

Geometric match to IL_4LFB_042

Geometric discrepancy: 0.1125

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

2JL5|1|A|G|1048
2JL5|1|A|U|1049
2JL5|1|A|G|1050
*
2JL5|1|A|C|1208
2JL5|1|A|C|1209

Current chains

Chain A

16S RRNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain Y

PEPTIDE CHAIN RELEASE FACTOR 2