IL_2JL7_051

3D structure

PDB id

2JL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL7_051 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.1545

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

2JL7|1|A|G|1405
2JL7|1|A|U|1406
2JL7|1|A|C|1407
*
2JL7|1|A|G|1494
2JL7|1|A|U|1495
2JL7|1|A|C|1496

Current chains

Chain A

16S RRNA

Nearby chains

Chain X

MRNA

Chain Y

PEPTIDE CHAIN RELEASE FACTOR 2