IL_2JL8_033

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAG*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL8_033 not in the Motif Atlas

Geometric match to IL_7RQB_034

Geometric discrepancy: 0.0657

The information below is about IL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

2JL8|1|A|G|952
2JL8|1|A|A|953
2JL8|1|A|G|954
*
2JL8|1|A|U|963
2JL8|1|A|C|964
2JL8|1|A|C|965

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

50S RIBOSOMAL PROTEIN L16