IL_2JL8_054

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

2JL8|1|A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL8_054 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.1057

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2JL8|1|A|C|1417
2JL8|1|A|G|1418
2JL8|1|A|A|1419
2JL8|1|A|U|1420
2JL8|1|A|G|1421
*
2JL8|1|A|C|1577
2JL8|1|A|U|1578
2JL8|1|A|A|1579
2JL8|1|A|A|1580
2JL8|1|A|G|1581

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains