IL_2JL8_058

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL8_058 not in the Motif Atlas

Geometric match to IL_7RQB_060

Geometric discrepancy: 0.1292

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2JL8|1|A|A|1469
2JL8|1|A|G|1470
2JL8|1|A|A|1471
2JL8|1|A|A|1472
2JL8|1|A|G|1473
*
2JL8|1|A|U|1518
2JL8|1|A|G|1519
2JL8|1|A|G|1520
2JL8|1|A|U|1523

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains