IL_2JL8_090

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

2JL8|1|A|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL8_090 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.1109

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

2JL8|1|A|A|2459
2JL8|1|A|U|2460
2JL8|1|A|C|2461
*
2JL8|1|A|G|2489
2JL8|1|A|G|2490
2JL8|1|A|U|2491
2JL8|1|A|U|2492
2JL8|1|A|U|2493

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L16