IL_2JL8_104

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL8_104 not in the Motif Atlas

Geometric match to IL_7RQB_109

Geometric discrepancy: 0.0936

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

2JL8|1|A|G|2843
2JL8|1|A|G|2844
2JL8|1|A|G|2845
2JL8|1|A|G|2846
*
2JL8|1|A|C|2870
2JL8|1|A|C|2871
2JL8|1|A|G|2872
2JL8|1|A|A|2873
2JL8|1|A|C|2874

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L3

Chain R

50S RIBOSOMAL PROTEIN L17

Chain T

50S RIBOSOMAL PROTEIN L19