IL_2JL8_110
3D structure
- PDB id
- 2JL8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2JL8_110 not in the Motif Atlas
- Geometric match to IL_7RQB_115
- Geometric discrepancy: 0.0547
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
2JL8|1|B|C|71
2JL8|1|B|G|72
2JL8|1|B|A|73
2JL8|1|B|U|74
2JL8|1|B|G|75
2JL8|1|B|G|76
2JL8|1|B|U|77
2JL8|1|B|A|78
2JL8|1|B|C|79
*
2JL8|1|B|G|98
2JL8|1|B|G|99
2JL8|1|B|A|100
2JL8|1|B|G|101
2JL8|1|B|A|102
2JL8|1|B|G|103
2JL8|1|B|U|104
2JL8|1|B|A|105
2JL8|1|B|G|106
Current chains
- Chain B
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 0
- 50S RIBOSOMAL PROTEIN L27
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 50S RIBOSOMAL PROTEIN L16
- Chain Z
- 50S RIBOSOMAL PROTEIN L25
Coloring options: