IL_2JTP_001

3D structure

PDB id

2JTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of the Frameshift-Inducing RNA Stem-Loop in SIV

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AGAAG*CAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JTP_001 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3584

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

2JTP|1|A|A|11
2JTP|1|A|G|12
2JTP|1|A|A|13
2JTP|1|A|A|14
2JTP|1|A|G|15
*
2JTP|1|A|C|21
2JTP|1|A|A|22
2JTP|1|A|A|23
2JTP|1|A|U|24

Current chains

Chain A

SIV17-50 RNA (34-MER)

Nearby chains