IL_2JYM_030

3D structure

PDB id

2JYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of stem-loop alpha of the hepatitis B virus post-transcriptional regulatory element

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

2JYM|15|A|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JYM_030 not in the Motif Atlas

Geometric match to IL_4V9F_039

Geometric discrepancy: 0.2459

The information below is about IL_4V9F_039

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

2JYM|15|A|G|9
2JYM|15|A|C|10
*
2JYM|15|A|G|13
2JYM|15|A|U|14
2JYM|15|A|C|15

Current chains

Chain A

RNA (5'-R(*GP*GP*CP*UP*CP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*UP*GP*GP*AP*GP*UP*C)-3')

Nearby chains