IL_2K3Z_002

3D structure

PDB id

2K3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of adenosine bulged RNA duplex with C:G-A triple

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2K3Z_002 not in the Motif Atlas

Geometric match to IL_1U6B_007

Geometric discrepancy: 0.3234

The information below is about IL_1U6B_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

2K3Z|2|A|G|4
2K3Z|2|A|A|5
2K3Z|2|A|G|6
*
2K3Z|2|B|C|13
2K3Z|2|B|C|14

Current chains

Chain A

RNA_(5'-R(*GP*UP*CP*GP*AP*GP*CP*UP*G)-3')_

Chain B

RNA_(5'-R(*CP*AP*GP*CP*CP*GP*AP*C)-3')_

Nearby chains