IL_2KH0_006

3D structure

PDB id

2KH0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

2-Hydroxy-7-nitrofluorene covalently linked into a 13mer DNA duplex - solution structure of the face-down orientation

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

A(3DR)A*T(3DR)T

Length

6 nucleotides

Bulged bases

2KH0|6|A|3DR|7, 2KH0|6|B|3DR|20

QA status

Modified nucleotides: 3DR

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2KH0|6|A|DA|6
2KH0|6|A|3DR|7
2KH0|6|A|DA|8
*
2KH0|6|B|DT|19
2KH0|6|B|3DR|20
2KH0|6|B|DT|21

Current chains

Chain A

5'-D(*GP*CP*TP*GP*CP*AP*(3DR)P*AP*CP*GP*TP*CP*G)-3'

Chain B

5'-D(*CP*GP*AP*CP*GP*TP*(3DR)P*TP*GP*CP*AP*GP*C)-3'

Nearby chains