IL_2KPC_001

3D structure

PDB id

2KPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2KPC_001 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2453

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

2KPC|7|A|G|2
2KPC|7|A|A|3
2KPC|7|A|G|4
*
2KPC|7|A|C|14
2KPC|7|A|U|15
2KPC|7|A|C|16

Current chains

Chain A

RNA (5'-R(*UP*GP*AP*GP*CP*AP*CP*AP*GP*UP*UP*UP*GP*CP*UP*CP*A)-3')

Nearby chains