IL_2KTZ_017

3D structure

PDB id

2KTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Inhibitor Induced Structural Change in the HCV IRES Domain IIa RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UC*GUG

Length

5 nucleotides

Bulged bases

2KTZ|6|A|U|29

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2KTZ_017 not in the Motif Atlas

Geometric match to IL_5TBW_032

Geometric discrepancy: 0.368

The information below is about IL_5TBW_032

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

2KTZ|6|A|U|14
2KTZ|6|A|C|15
*
2KTZ|6|A|G|28
2KTZ|6|A|U|29
2KTZ|6|A|G|30

Current chains

Chain A

HCV IRES Domain IIa RNA

Nearby chains