IL_2KTZ_022

3D structure

PDB id

2KTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Inhibitor Induced Structural Change in the HCV IRES Domain IIa RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAACUAC*GC

Length

9 nucleotides

Bulged bases

2KTZ|8|A|A|7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2KTZ|8|A|G|5
2KTZ|8|A|A|6
2KTZ|8|A|A|7
2KTZ|8|A|C|8
2KTZ|8|A|U|9
2KTZ|8|A|A|10
2KTZ|8|A|C|11
*
2KTZ|8|A|G|33
2KTZ|8|A|C|34

Current chains

Chain A

HCV IRES Domain IIa RNA

Nearby chains