IL_2LP9_009

3D structure

PDB id

2LP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudo-triloop from the sub-genomic promoter of Brome Mosaic Virus

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

2LP9|9|A|A|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2LP9_009 not in the Motif Atlas

Geometric match to IL_5TBW_094

Geometric discrepancy: 0.3863

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

2LP9|9|A|A|5
2LP9|9|A|C|6
*
2LP9|9|A|G|10
2LP9|9|A|A|11
2LP9|9|A|U|12

Current chains

Chain A

RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3')

Nearby chains