IL_2LVY_011

3D structure

PDB id

2LVY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of a RNA Duplex Containing a 2'-O-Pivaloyloxymethyl Modification

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGC,GCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2LVY_011 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.2886

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

2LVY|9|A|C|6
2LVY|9|A|G|7
2LVY|9|A|C|8
*
2LVY|9|B|G|10
2LVY|9|B|C|11
2LVY|9|B|G|12

Current chains

Chain A

RNA (5'-R(*CP*GP*CP*(UPV)P*AP*CP*GP*CP*T)-3')

Chain B

RNA (5'-R(*GP*CP*GP*UP*AP*GP*CP*GP*T)-3')

Nearby chains