IL_2LVY_024

3D structure

PDB id

2LVY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of a RNA Duplex Containing a 2'-O-Pivaloyloxymethyl Modification

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GC(UPV)A*UAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2LVY_024 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.3036

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

2LVY|20|A|G|2
2LVY|20|A|C|3
2LVY|20|A|UPV|4
2LVY|20|A|A|5
*
2LVY|20|B|U|13
2LVY|20|B|A|14
2LVY|20|B|G|15
2LVY|20|B|C|16

Current chains

Chain A

RNA (5'-R(*CP*GP*CP*(UPV)P*AP*CP*GP*CP*T)-3')

Chain B

RNA (5'-R(*GP*CP*GP*UP*AP*GP*CP*GP*T)-3')

Nearby chains