IL_2M58_018

3D structure

PDB id

2M58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 2'-5' AG1 lariat forming ribozyme in its inactive state

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

(GTP)GAAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: GTP

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2M58_018 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2934

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

2M58|8|A|GTP|1
2M58|8|A|G|2
2M58|8|A|A|3
2M58|8|A|A|4
2M58|8|A|G|5
*
2M58|8|A|C|23
2M58|8|A|A|24
2M58|8|A|A|25
2M58|8|A|A|26
2M58|8|A|C|27

Current chains

Chain A

RNA (59-MER)

Nearby chains